1LF5

Crystal Structure of RasA59G in the GDP-bound Form

Structural Biology Knowledgebase: 1LF5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.222

Literature

Macromolecules
Sequence Display for 1LF5

Classification: SIGNALING PROTEIN

Total Structure Weight: 19328.81

Macromolecule Entities
Molecule Chains Length Organism Details
Transforming protein P21/H-RAS-1 A 166 Homo sapiens Fragment: Residues 1-166
Mutation: A59G
Gene Name(s): HRAS Gene View HRAS1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GDP
Query on GDP

A GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.222
  • Space Group: H 3 2

Unit Cell:

Length (Å) Angle (°)
a = 93.11 α = 90.00
b = 93.11 β = 90.00
c = 120.30 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-04-10
  • Released Date: 2002-11-06
  • Deposition author(s): Hall, B.E., Bar-Sagi, D., Nassar, N.

Revision History

  • 2011-11-16
    Type: Atom occupancy | Details: Atom occupancy
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4