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Crystal Structure of Tobramycin Bound to the Eubacterial 16S rRNA A Site
DOI:10.2210/pdb1lc4/pdb   NDB ID: DR0007
1LC4
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: RNA
    Structure Weight: 15645.96
    Molecule: 5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'
    Polymer: 1 Type: rna Length: 23
    Chains: A, B
    Details: eubacterial 16S RRNA A SITE
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1J7T  1J7T contains the X-ray structure of Paromomycin bound to the A site 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    TOY
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    TOY C18 H37 N5 O9
    TOBRAMYCIN
    TOY:1LC4
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: DR0007
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Vicens, Q.,  Westhof, E.

    Deposition:   2002-04-05
    Release:   2003-04-08
    Last Modified (REVDAT):   2012-02-08
     
  •   Revision History    Hide
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    2012-02-08
    Binding sites and description
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.54
    R-Value: 0.214 (work)
    R-Free: 0.264
    Space Group: P 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 46.90 α = 90.00 
    b = 32.80 β = 107.90 
    c = 52.00 γ = 90.00