1LAJ

The Structure of Tomato Aspermy Virus by X-Ray Crystallography

Structural Biology Knowledgebase: 1LAJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.4 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.218

Literature

Macromolecules
Sequence Display for 1LAJ

Classification: Virus / RNA [ VIPERdb ]

Total Structure Weight: 1101763.88


Macromolecule Entities
Molecule Chains Length Organism Details
capsid protein A, B, C 217 Tomato aspermy virus Gene Name(s): ORF3b
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-R(*AP*AP*A)-3' R 3 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.4 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.218
  • Space Group: I 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 294.30 α = 90.00
b = 327.39 β = 90.00
c = 382.07 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-03-28
  • Released Date: 2002-11-27
  • Deposition author(s): Lucas, R.W., Larson, S.B., Canady, M.A., McPherson, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4