The Structure of Tomato Aspermy Virus by X-Ray Crystallography
DOI:10.2210/pdb1laj/pdb   NDB ID: PR0068
1LAJ
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Virus/rna  [ VIPERdb   ]
    Structure Weight: 73451.04
    Molecule: 5'-R(*AP*AP*A)-3'
    Polymer: 1 Type: rna Length: 3
    Chains: R
    Molecule: capsid protein
    Polymer: 2 Type: protein Length: 217
    Chains: A, B, C
    Organism: Tomato aspermy virus
    Gene Name: ORF3b
    UniProtKB: Protein Feature View | Search PDB | P23627  
     
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  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Tomato aspermy virus   Taxonomy    
     
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    Identifier Details
    1F15   Cucumber Mosaic Virus used as molecular replacement model 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    MG
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    MG Mg
    MAGNESIUM ION
    PO4
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    PO4 O4 P
    PHOSPHATE ION
     
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  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:PR0068
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
No info available for origin of biological assembly
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  •   Deposition Summary Hide
    Authors:   Lucas, R.W.,  Larson, S.B.,  Canady, M.A.,  McPherson, A.

    Deposition:   2002-03-28
    Release:   2002-11-27
    Last Modified (REVDAT):   2009-02-24
     
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   3.40
    R-Value: 0.218 (work)
    R-Free: 0.228
    Space Group: I 2 2 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 294.30 α = 90.00 
    b = 327.39 β = 90.00 
    c = 382.07 γ = 90.00