1L8D

Rad50 coiled-coil Zn hook

Structural Biology Knowledgebase: 1L8D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.278
  • R-Value Work: 0.225

Literature

Macromolecules
Sequence Display for 1L8D

Classification: REPLICATION

Total Structure Weight: 27269.37

Macromolecule Entities
Molecule Chains Length Organism Details
DNA double-strand break repair rad50 ATPase A, B 112 Pyrococcus furiosus Fragment: Rad50 coiled-coil fragment containing the CXXC motif, Rad50 molecular hook
Gene Name(s): rad50 PF1167
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HG
Query on HG

A MERCURY (II) ION
Hg
BQPIGGFYSBELGY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CIT
Query on CIT

A CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A, B PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.278
  • R-Value Work: 0.225
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 31.96 α = 90.00
b = 77.87 β = 91.55
c = 53.33 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-03-20
  • Released Date: 2002-08-28
  • Deposition author(s): Hopfner, K.P., Tainer, J.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4