1L4Z

X-RAY CRYSTAL STRUCTURE OF THE COMPLEX OF MICROPLASMINOGEN WITH ALPHA DOMAIN OF STREPTOKINASE IN THE PRESENCE CADMIUM IONS

Structural Biology Knowledgebase: 1L4Z SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.220

Literature

Macromolecules
Sequence Display for 1L4Z

Classification: HYDROLASE / BLOOD CLOTTING

Total Structure Weight: 42759.73

Macromolecule Entities
Molecule Chains Length Organism Details
Plasminogen A 248 Homo sapiens EC#: 3.4.21.7 IUBMB
Fragment: Catalytic domain, Residues 544-791
Mutation: S741A
Gene Name(s): PLG Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Streptokinase B 136 Streptococcus dysgalactiae Fragment: N terminal alpha domain, Residues 0-147
Mutation: W6A, ΔH48, ΔG49, ΔG50, ΔK51, ΔT52, ΔE53, ΔQ54, ΔG55, ΔL56, ΔS57, ΔP58, ΔK59
Gene Name(s): skc
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CD
Query on CD

A, B CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.220
  • Space Group: P 65 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 118.40 α = 90.00
b = 118.40 β = 90.00
c = 134.90 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-03-06
  • Released Date: 2002-12-11
  • Deposition author(s): Wakeham, N., Terzyan, S., Zhai, P., Loy, J.A., Tang, J., Zhang, X.C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4