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Holliday Junction TCGGTACCGA with Na and Ca Binding Sites.
DOI:10.2210/pdb1l4j/pdb   NDB ID: UD0018
1L4J
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: DNA
    Structure Weight: 12386.42
    Molecule: 5'-D(*TP*CP*GP*GP*TP*AP*CP*CP*GP*A)-3'
    Polymer: 1 Type: dna Length: 10
    Chains: A, B, C, D
    Details: section of Holliday junction
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CA
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    CA Ca
    CALCIUM ION
    NA
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    NA Na
    SODIUM ION
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: UD0018
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Thorpe, J.H.,  Gale, B.C.,  Teixeira, S.C.M.,  Cardin, C.J.

    Deposition:   2002-03-05
    Release:   2003-03-04
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.85
    R-Value: 0.231 (obs.)
    R-Free: 0.297
    Space Group: C 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 66.07 α = 90.00 
    b = 23.77 β = 110.58 
    c = 73.82 γ = 90.00