1L2G

Structure of a C-terminally truncated form of glycoprotein D from HSV-1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.85 Å
  • R-Value Free: 0.297
  • R-Value Work: 0.278

Literature

Macromolecules
Sequence Display for 1L2G

Classification: VIRAL PROTEIN

Total Structure Weight: 128233.51

Macromolecule Entities
Molecule Chains Length Organism Details
Glycoprotein D A, B, C, D 287 Human alphaherpesvirus 1 Fragment: Ectodomain
Gene Name(s): gD US6
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B, C, D N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.85 Å
  • R-Value Free: 0.297
  • R-Value Work: 0.278
  • Space Group: P 4

Unit Cell:

Length (Å) Angle (°)
a = 131.42 α = 90.00
b = 131.42 β = 90.00
c = 83.26 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-02-21
  • Released Date: 2003-12-16
  • Deposition author(s): Carfi, A., Willis, S.H., Whitbeck, J.C., Krummenacher, C., Cohen, G.H., Eisenberg, R.J., Wiley, D.C.

Revision History

  • 2008-04-28
    Type: Version format compliance
  • 2011-07-13
    Type: Non-polymer description, Version format compliance