1L0V

Quinol-Fumarate Reductase with Menaquinol Molecules

Structural Biology Knowledgebase: 1L0V SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.290
  • R-Value Work: 0.245

Literature

Macromolecules
Sequence Display for 1L0V

Classification: OXIDOREDUCTASE

Total Structure Weight: 250426.86

Macromolecule Entities
Molecule Chains Length Organism Details
Fumarate reductase flavoprotein subunit A, M 602 Escherichia coli EC#: 1.3.5.4 IUBMB
Gene Name(s): frdA b4154 JW4115
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Fumarate reductase iron-sulfur protein B, N 243 Escherichia coli EC#: 1.3.5.1 IUBMB
Gene Name(s): frdB b4153 JW4114
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Fumarate reductase 15 kDa hydrophobic protein C, O 130 Escherichia coli Gene Name(s): frdC b4152 JW4113
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Fumarate reductase 13 kDa hydrophobic protein D, P 119 Escherichia coli Gene Name(s): frdD b4151 JW4112
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 7 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A, M FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MQ7
Query on MQ7

B, D, N, P MENAQUINONE-7
C46 H64 O2
RAKQPZMEYJZGPI-LJWNYQGCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CE1
Query on CE1

D, O O-DODECANYL OCTAETHYLENE GLYCOL
THESIT (Synonym)
C28 H58 O9
YYELLDKEOUKVIQ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SF4
Query on SF4

B, N IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-VKOJMFJBAC
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
F3S
Query on F3S

B, N FE3-S4 CLUSTER
Fe3 S4
FCXHZBQOKRZXKS-MZMDZPPWAW
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FES
Query on FES

B, N FE2/S2 (INORGANIC) CLUSTER
Fe2 S2
NIXDOXVAJZFRNF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
OAA
Query on OAA

A, M OXALOACETATE ION
C4 H3 O5
KHPXUQMNIQBQEV-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.290
  • R-Value Work: 0.245
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 96.59 α = 90.00
b = 138.09 β = 90.00
c = 275.25 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-02-13
  • Released Date: 2002-03-13
  • Deposition author(s): Iverson, T.M., Luna-Chavez, C., Croal, L.R., Cecchini, G., Rees, D.C.
  • Previous versions: 1FUM

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4