1L0R

NMR Solution Structure of Nogalamycin Intercalation Between Co-Axially Stacked Hairpins

Structural Biology Knowledgebase: 1L0R SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: --
  • Conformers Submitted: 1
  • Selection Criteria:

Literature

Macromolecules
Sequence Display for 1L0R

Classification: DNA

Total Structure Weight: 5405.59

Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*AP*CP*GP*AP*AP*GP*TP*GP*CP*GP*AP*AP*GP*C)-3' A 14 synthetic co-axially stacked DNA hairpin

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NGP
Query on NGP

A NOGALAMYCIN (PROTONATED FORM)
C39 H52 N O16
NXHOGSUAUGLOER-JRDTZGCNSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: --
  • Conformers Submitted: 1
  • Selection Criteria: --

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2002-02-12
  • Released Date: 2002-06-19
  • Deposition author(s): Williams, H.E.L., Colgrave, M.L., Searle, M.S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4