1L0L

structure of bovine mitochondrial cytochrome bc1 complex with a bound fungicide famoxadone

Structural Biology Knowledgebase: 1L0L SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.306
  • R-Value Work: 0.259

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1L0L

Classification: OXIDOREDUCTASE

Total Structure Weight: 243736.45

Macromolecule Entities
Molecule Chains Length Organism Details
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN I A 446 Bos taurus EC#: 1.10.2.2 IUBMB
Gene Name(s): UQCRC1 Gene View
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN 2 B 439 Bos taurus EC#: 1.10.2.2 IUBMB
Gene Name(s): UQCRC2 Gene View
Cytochrome B C 379 Bos taurus Gene Name(s): MT-CYB Gene View COB CYTB MTCYB
Cytochrome c1, heme protein D 241 Bos taurus Gene Name(s): CYC1 Gene View
UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT E 196 Bos taurus EC#: 1.10.2.2 IUBMB
Gene Name(s): UQCRFS1 Gene View
Ubiquinol-cytochrome C reductase complex 14 kDa protein F 110 Bos taurus Gene Name(s): UQCRB Gene View
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C G 81 Bos taurus EC#: 1.10.2.2 IUBMB
Gene Name(s): UQCRQ Gene View
Ubiquinol-cytochrome C reductase complex 11 kDa protein H 78 Bos taurus EC#: 1.10.2.2 IUBMB
Gene Name(s): UQCRH Gene View
UBIQUINOL-CYTOCHROME C REDUCTASE 8 KDA PROTEIN I 78 Bos taurus EC#: 1.10.2.2 IUBMB
Gene Name(s): UQCRFS1 Gene View
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein J 62 Bos taurus EC#: 1.10.2.2 IUBMB
Gene Name(s): UQCR10 Gene View
Ubiquinol-cytochrome C reductase complex 6.4 kDa protein K 56 Bos taurus EC#: 1.10.2.2 IUBMB
Mutation: S22Q
Gene Name(s): UQCR11 Gene View UQCR

Membrane Protein

Source: inferred by homology | Group: ALPHA-HELICAL

Subgroup Name: Electron Transport Chain Complexes: Complex III (Cytochrome bc1)

Protein Name: Cytochrome bc1


Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

C, D PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FMX
Query on FMX

C FAMOXADONE
4-OXAZOLIDINEDIONE, (Synonym)
C22 H18 N2 O4
PCCSBWNGDMYFCW-QFIPXVFZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FES
Query on FES

E FE2/S2 (INORGANIC) CLUSTER
Fe2 S2
NIXDOXVAJZFRNF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.306
  • R-Value Work: 0.259
  • Space Group: I 41 2 2

Unit Cell:

Length (Å) Angle (°)
a = 154.09 α = 90.00
b = 154.09 β = 90.00
c = 591.84 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-02-11
  • Released Date: 2003-04-08
  • Deposition author(s): Gao, X., Wen, X., Yu, C.A., Esser, L., Tsao, S., Quinn, B., Zhang, L., Yu, L., Xia, D.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4