1KZD

Complex of MBP-C and GlcNAc-terminated core

Structural Biology Knowledgebase: 1KZD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.198

Literature

Macromolecules
Sequence Display for 1KZD

Classification: IMMUNE SYSTEM SUGAR BINDING PROTEIN

Total Structure Weight: 26263.58

Macromolecule Entities
Molecule Chains Length Organism Details
MANNOSE-BINDING PROTEIN C 1, 2 115 Rattus norvegicus Fragment: SUBTILISIN FRAGMENT (RESIDUES 129-243 of P08661)
Gene Name(s): Mbl2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

1, 2 N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

1, 2 CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.198
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 60.65 α = 90.00
b = 75.05 β = 90.00
c = 57.35 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-02-06
  • Released Date: 2002-07-05
  • Deposition author(s): Ng, K.K., Kolatkar, A.R., Park-Snyder, S., Feinberg, H., Clark, D.A., Drickamer, K., Weis, W.I.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4