1KYT

Crystal Structure of Thermoplasma acidophilum 0175 (APC014)

Structural Biology Knowledgebase: 1KYT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.224

Literature

Macromolecules
Sequence Display for 1KYT

Classification: STRUCTURAL GENOMICS UNKNOWN FUNCTION

Total Structure Weight: 52291.03

Macromolecule Entities
Molecule Chains Length Organism Details
hypothetical protein TA0175 A, B 227 Thermoplasma acidophilum EC#: 3.1.3.18 IUBMB
Mutation: M1M, T12N, M70M, M93M, M99M, M145M, M161M, M179M, M181M, M224M
Gene Name(s): Ta0175
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.224
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 88.53 α = 90.00
b = 99.32 β = 90.00
c = 113.89 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-02-05
  • Released Date: 2003-01-21
  • Deposition author(s): Kim, Y., Joachimiak, A., Edwards, A., Xu, X., Pennycooke, M., Gu, J., Cheung, F., Christendat, D., Midwest Center for Structural Genomics (MCSG)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values