1KYJ

Tumor Associated Mucin Motif from CD43 protein

Structural Biology Knowledgebase: 1KYJ SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200
  • Conformers Submitted: 59
  • Selection Criteria: No Noe Violations Greter Than 0.15a No Coupling Violation Greater Than 0.5 Hz No Angle Violation Greater Than 5 Deg.

Literature

Macromolecules
Sequence Display for 1KYJ

Classification: glycoprotein immune system

Total Structure Weight: 1167.18

Macromolecule Entities
Molecule Chains Length Organism Details
Leukosialin (CD43) fragment A 6 synthetic Fragment: N-terminal glycopentapeptide
Details: Ser A 1, Thr A 2, Thr A 3 modified with glycosylation by STF antigen

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
A2G
Query on A2G

A N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
C8 H15 N O6
OVRNDRQMDRJTHS-CBQIKETKSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
ACE
Query on ACE
A NON-POLYMER C2 H4 O --

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200
  • Conformers Submitted: 59
  • Selection Criteria: No NOE violations greter than 0.15A, no coupling violation greater than 0.5 Hz, no angle violation greater than 5 deg.

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-02-04
  • Released Date: 2002-02-20
  • Deposition author(s): Coltart, D.M., Williams, L.J., Glunz, P.W., Sames, D., Kuduk, S.D., Schwarz, J.B., Chen, X.-T., Royyuru, A.K., Danishefsky, S.D., Live, D.H.
  • Previous versions: 1SIA

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4