1KRM

Crystal structure of bovine adenosine deaminase complexed with 6-hydroxyl-1,6-dihydropurine riboside

Structural Biology Knowledgebase: 1KRM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.198
  • R-Value Work: 0.196

Literature

Macromolecules
Sequence Display for 1KRM

Classification: HYDROLASE

Total Structure Weight: 40663.73

Macromolecule Entities
Molecule Chains Length Organism Details
adenosine deaminase A 356 Bos taurus EC#: 3.5.4.4 IUBMB
Mutation: Q44L
Gene Name(s): ADA Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PRH
Query on PRH

A 6-HYDROXY-1,6-DIHYDRO PURINE NUCLEOSIDE
C10 H15 N4 O5
WGRXVKRHIMUTPD-YOHZANMFSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.198
  • R-Value Work: 0.196
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 80.03 α = 90.00
b = 80.03 β = 90.00
c = 141.68 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-01-10
  • Released Date: 2003-01-14
  • Deposition author(s): Kinoshita, T.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4