1KGQ

Crystal Structure of Tetrahydrodipicolinate N-Succinyltransferase in Complex with L-2-aminopimelate and Succinamide-CoA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.174

Literature

Macromolecules
Sequence Display for 1KGQ

Classification: TRANSFERASE

Total Structure Weight: 30944.73

Macromolecule Entities
Molecule Chains Length Organism Details
2,3,4,5-TETRAHYDROPYRIDINE-2-CARBOXYLATE N-SUCCINYLTRANSFERASE A 274 Mycobacterium bovis EC#: 2.3.1.117 IUBMB
Gene Name(s): dapD
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SCO
Query on SCO

A SUCCINAMIDE-COA
C25 H41 N8 O19 P3
WZEXTLJNSXEEHK-ITIYDSSPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NPI
Query on NPI

A (2S)-2-aminoheptanedioic acid
L-2-AMINOPIMELIC ACID (Synonym)
C7 H13 N O4
JUQLUIFNNFIIKC-YFKPBYRVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.174
  • Space Group: H 3

Unit Cell:

Length (Å) Angle (°)
a = 95.84 α = 90.00
b = 95.84 β = 90.00
c = 72.64 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-11-28
  • Released Date: 2002-04-03
  • Deposition author(s): Beaman, T.W., Vogel, K.W., Drueckhammer, D.G., Blanchard, J.S., Roderick, S.L.

Revision History

  • 2008-04-27
    Type: Version format compliance
  • 2011-07-13
    Type: Derived calculations, Version format compliance
  • 2016-06-01
    Type: Non-polymer description