1KBZ

Crystal Structure of apo-dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) from Salmonella enterica serovar Typhimurium

Structural Biology Knowledgebase: 1KBZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.189

Literature

Macromolecules
Sequence Display for 1KBZ

Classification: OXIDOREDUCTASE

Total Structure Weight: 32614.53

Macromolecule Entities
Molecule Chains Length Organism Details
dTDP-glucose oxidoreductase A 299 Salmonella enterica EC#: 1.1.1.133 IUBMB
Gene Name(s): rfbD rmlD STM2096
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.189
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 47.53 α = 90.00
b = 71.90 β = 90.00
c = 82.16 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-11-07
  • Released Date: 2002-06-28
  • Deposition author(s): Blankenfeldt, W., Kerr, I.D., Giraud, M.F., McMiken, H.J., Leonard, G.A., Whitfield, C., Messner, P., Graninger, M., Naismith, J.H.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4