1KBC

PROCARBOXYPEPTIDASE TERNARY COMPLEX

Structural Biology Knowledgebase: 1KBC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Observed: 0.191

Literature

Macromolecules
Sequence Display for 1KBC

Classification: METALLOPROTEINASE

Total Structure Weight: 37318.43

Macromolecule Entities
Molecule Chains Length Organism Details
NEUTROPHIL COLLAGENASE A, B 164 Homo sapiens EC#: 3.4.24.34 IUBMB
Fragment: CATALYTIC DOMAIN
Gene Name(s): MMP8 Gene View CLG1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RIN
Query on RIN

A, B 3-AMINO-AZACYCLOTRIDECAN-2-ONE
C12 H24 N2 O
CQZLEYBEPASILI-NSHDSACASA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
HLE
Query on HLE

A, B 3-FORMYL-2-HYDROXY-5-METHYL-HEXANOIC ACID HYDROXYAMIDE
C8 H15 N O4
YVDHZNIQWHUORH-BQBZGAKWSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Observed: 0.191
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 44.70 α = 90.00
b = 80.80 β = 90.00
c = 108.10 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-04-29
  • Released Date: 1997-08-12
  • Deposition author(s): Betz, M., Gomis-Rueth, F.X., Bode, W.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4