1K8I

CRYSTAL STRUCTURE OF MOUSE H2-DM

Structural Biology Knowledgebase: 1K8I SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.205

Literature

Macromolecules
Sequence Display for 1K8I

Classification: IMMUNE SYSTEM

Total Structure Weight: 43239.57

Macromolecule Entities
Molecule Chains Length Organism Details
MHC class II H2-M alpha chain A 191 Mus musculus Gene Name(s): H2-DMa H2-Ma Ma
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
MHC class II H2-M beta 2 chain B 191 Mus musculus Gene Name(s): H2-DMb2 H2-M beta2 H2-Mb2 mCG_132703
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.205
  • Space Group: I 4

Unit Cell:

Length (Å) Angle (°)
a = 142.70 α = 90.00
b = 142.70 β = 90.00
c = 76.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-10-24
  • Released Date: 2001-12-05
  • Deposition author(s): Fremont, D.H., Crawford, F., Marrack, P., Hendrickson, W., Kappler, J.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4