1K01

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Structural Biology Knowledgebase: 1K01 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.321
  • R-Value Work: 0.275

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1K01

Classification: RIBOSOME

Total Structure Weight: 978111.63


Macromolecule Entities
Molecule Chains Length Organism Details
Ribosomal Protein L4 K 205 Deinococcus radiodurans Gene Name(s): rplD DR_0312
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal Protein L22 L 134 Deinococcus radiodurans Gene Name(s): rplV DR_0316
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ribosomal Protein L32 M 60 Deinococcus radiodurans Gene Name(s): rpmF DR_2366
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
23S rRNA A 2880 Deinococcus radiodurans

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CLM
Query on CLM

A CHLORAMPHENICOL
C11 H12 Cl2 N2 O5
WIIZWVCIJKGZOK-RKDXNWHRSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.321
  • R-Value Work: 0.275
  • Space Group: I 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 171.10 α = 90.00
b = 409.30 β = 90.00
c = 696.90 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2001-09-17
  • Released Date: 2001-10-26
  • Deposition author(s): Schluenzen, F., Zarivach, R., Harms, J., Bashan, A., Tocilj, A., Albrecht, R., Yonath, A., Franceschi, F.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4