1JYC

CONCANAVALIN A/15-mer PEPTIDE COMPLEX


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.195

Literature

Macromolecules
Sequence Display for 1JYC

Classification: SUGAR BINDING PROTEIN

Total Structure Weight: 109701.05

Macromolecule Entities
Molecule Chains Length Organism Details
Concanavalin-Br A, B, C, D 237 Canavalia ensiformis Mutation: G58D, G70A, E151D, R155E
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
15-mer peptide P, Q, R, S 15 Synthetic construct

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MN
Query on MN

A, B, C, D MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B, C, D CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.195
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 103.11 α = 90.00
b = 118.55 β = 90.00
c = 254.99 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-09-12
  • Released Date: 2002-09-12
  • Deposition author(s): Jain, D., Kaur, K.J., Salunke, D.M.

Revision History

  • Version 1_0: 2002-09-12

    Type: Initial release

  • Version 1_1: 2008-04-27

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2017-06-21

    Type: Database references, Source and taxonomy, Structure summary