1JY1

CRYSTAL STRUCTURE OF HUMAN TYROSYL-DNA PHOSPHODIESTERASE (TDP1)

Structural Biology Knowledgebase: 1JY1 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.69 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.198

Literature

Macromolecules
Sequence Display for 1JY1

Classification: HYDROLASE

Total Structure Weight: 52898.21

Macromolecule Entities
Molecule Chains Length Organism Details
TYROSYL-DNA PHOSPHODIESTERASE A 464 Homo sapiens EC#: 3.1.4 IUBMB
Fragment: Residues 149-608
Mutation: M157M, M266M, M267M, D322N, M328T, M386M, M420M, M491M, M498M, M533M, F548L, M567M, M604M
Gene Name(s): TDP1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.69 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.198
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 186.45 α = 90.00
b = 52.03 β = 90.00
c = 56.31 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-09-10
  • Released Date: 2002-02-20
  • Deposition author(s): Davies, D.R., Interthal, H., Champoux, J.J., Hol, W.G.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4