1JXM

CRYSTAL STRUCTURE OF THE GMP BOUND SH3-HOOK-GK FRAGMENT OF PSD-95

Structural Biology Knowledgebase: 1JXM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.237

Literature

Macromolecules
Sequence Display for 1JXM

Classification: STRUCTURAL PROTEIN

Total Structure Weight: 35531.02

Macromolecule Entities
Molecule Chains Length Organism Details
POSTSYNAPTIC DENSITY PROTEIN A 301 Rattus norvegicus Fragment: SH3-HOOK-GK
Gene Name(s): Dlg4 Dlgh4 Psd95
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
5GP
Query on 5GP

A GUANOSINE-5'-MONOPHOSPHATE
C10 H14 N5 O8 P
RQFCJASXJCIDSX-UUOKFMHZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MPD
Query on MPD

A (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GAI
Query on GAI

A GUANIDINE
C H5 N3
ZRALSGWEFCBTJO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.237
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 59.72 α = 90.00
b = 59.72 β = 90.00
c = 209.96 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-09-07
  • Released Date: 2002-01-16
  • Deposition author(s): Tavares, G.A., Panepucci, E.H., Brunger, A.T.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4