1JXI

4-Amino-5-hydroxymethyl-2-methylpyrimidine Phosphate Kinase from Salmonella typhimurium complexed with 4-Amino-5-hydroxymethyl-2-methylpyrimidine


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.64 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.230

Literature

Macromolecules
Sequence Display for 1JXI

Classification: TRANSFERASE

Total Structure Weight: 63207.46

Macromolecule Entities
Molecule Chains Length Organism Details
PHOSPHOMETHYLPYRIMIDINE KINASE A, B 288 Salmonella enterica EC#: 2.7.1.49 IUBMB 2.7.4.7 IUBMB
Gene Name(s): thiD STM2146
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HMH
Query on HMH

A, B 4-AMINO-5-HYDROXYMETHYL-2-METHYLPYRIMIDINE
C6 H9 N3 O
VUTBELPREDJDDH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.64 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.230
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 77.75 α = 90.00
b = 77.75 β = 90.00
c = 183.49 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-09-07
  • Released Date: 2002-02-27
  • Deposition author(s): Cheng, G., Bennett, E.M., Begley, T.P., Ealick, S.E.

Revision History

  • 2008-04-27
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance