1JWT

CRYSTAL STRUCTURE OF THROMBIN IN COMPLEX WITH A NOVEL BICYCLIC LACTAM INHIBITOR

Structural Biology Knowledgebase: 1JWT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.301
  • R-Value Work: 0.182

Literature

Macromolecules
Sequence Display for 1JWT

Classification: HYDROLASE

Total Structure Weight: 35616.90

Macromolecule Entities
Molecule Chains Length Organism Details
Prothrombin A 305 Homo sapiens EC#: 3.4.21.5 IUBMB
Fragment: Residues 328-622
Gene Name(s): F2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BLI
Query on BLI

A 4-OXO-2-PHENYLMETHANESULFONYL-OCTAHYDRO-PYRROLO[1,2- A]PYRAZINE-6-CARBOXYLIC ACID [1-(N-HYDROXYCARBAMIMIDOYL)- PIPERIDIN-4-YLMETHYL]-AMIDE
C22 H32 N6 O5 S
DHTSUHWLPAEEQB-OALUTQOASA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
BLI Ki: 14 nM (88) BindingDB

Ki: 14 nM  BindingMOAD
Ki: 14 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.301
  • R-Value Work: 0.182
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 71.54 α = 90.00
b = 72.18 β = 100.99
c = 73.41 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-09-05
  • Released Date: 2002-02-27
  • Deposition author(s): Levesque, S., St-Denis, Y., Bachand, B., Preville, P., Leblond, L., Winocour, P.D., Edmunds, J.J., Rubin, J.R., Siddiqui, M.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4