1JWG

VHS Domain of human GGA1 complexed with cation-independent M6PR C-terminal Peptide

Structural Biology Knowledgebase: 1JWG SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.226

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1JWG

Classification: PROTEIN TRANSPORT / PROTEIN BINDING

Total Structure Weight: 37479.81

Macromolecule Entities
Molecule Chains Length Organism Details
ADP-ribosylation factor binding protein GGA1 A, B 147 Homo sapiens Fragment: VHS DOMAIN(N-terminal domain)
Gene Name(s): GGA1 Gene View
Cation-independent mannose-6-phosphate receptor C, D 13 Homo sapiens Fragment: C-terminal fragment
Gene Name(s): IGF2R Gene View MPRI

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IOD
Query on IOD

A, B IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.226
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 56.15 α = 90.00
b = 65.77 β = 90.00
c = 101.43 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-09-04
  • Released Date: 2002-03-06
  • Deposition author(s): Shiba, T., Takatsu, H., Nogi, T., Matsugaki, N., Kawasaki, M., Igarashi, N., Suzuki, M., Kato, R., Earnest, T., Nakayama, K., Wakatsuki, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4