1JVS

Crystal structure of 1-deoxy-D-xylulose 5-phosphate reductoisomerase; a target enzyme for antimalarial drugs


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.213

Literature

Macromolecules
Sequence Display for 1JVS

Classification: OXIDOREDUCTASE

Total Structure Weight: 90402.95

Macromolecule Entities
Molecule Chains Length Organism Details
1-deoxy-D-xylulose 5-phosphate reductoisomerase A, B 400 Escherichia coli EC#: 1.1.1.267 IUBMB
Mutation: M41M, M55M, M67M, M87M, M97M, M135M, M200M, M213M, M224M, M225M, M245M, M258M, M275M, M283M, M321M, M366M, M368M, M393M
Gene Name(s): dxr ispC yaeM b0173 JW0168
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NDP
Query on NDP

A, B NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
C21 H30 N7 O17 P3
ACFIXJIJDZMPPO-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.213
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 182.16 α = 90.00
b = 59.19 β = 90.00
c = 87.24 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-08-31
  • Released Date: 2002-10-09
  • Deposition author(s): Yajima, S., Nonaka, T., Kuzuyama, T., Seto, H., Ohsawa, K.

Revision History

  • 2008-04-27
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance