1JV2

CRYSTAL STRUCTURE OF THE EXTRACELLULAR SEGMENT OF INTEGRIN ALPHAVBETA3

Structural Biology Knowledgebase: 1JV2 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.335
  • R-Value Work: 0.255

Literature

Macromolecules
Sequence Display for 1JV2

Classification: CELL ADHESION

Total Structure Weight: 186627.94

Macromolecule Entities
Molecule Chains Length Organism Details
INTEGRIN, ALPHA V A 957 Homo sapiens Fragment: Residues 31-987
Gene Name(s): ITGAV Gene View MSK8 VNRA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PLATELET MEMBRANE GLYCOPROTEIN IIIA BETA SUBUNIT B 692 Homo sapiens Fragment: Residues 27-718
Gene Name(s): ITGB3 Gene View GP3A
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NDG
Query on NDG

A, B 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
C8 H15 N O6
OVRNDRQMDRJTHS-PVFLNQBWSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.335
  • R-Value Work: 0.255
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 130.00 α = 90.00
b = 130.00 β = 90.00
c = 307.30 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-08-28
  • Released Date: 2001-10-17
  • Deposition author(s): Xiong, J.P., Stehle, T., Diefenbach, B., Zhang, R., Dunker, R., Scott, D., Joachimiak, A., Goodman, S.L., Arnaout, M.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update