1JUF

Structure of Minor Histocompatibility Antigen peptide, H13b, complexed to H2-Db


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.205

Literature

Macromolecules
Sequence Display for 1JUF

Classification: IMMUNE SYSTEM

Total Structure Weight: 44875.71

Macromolecule Entities
Molecule Chains Length Organism Details
H2-Db major histocompatibility antigen A 276 Mus musculus Fragment: extracellular domain
Mutation: P276R
Gene Name(s): H2-D1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Beta-2-microglobulin B 99 Mus musculus Gene Name(s): B2m
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
H13b peptide C 9 Mus musculus EC#: 3.4.23 IUBMB
Fragment: H13b nonamer peptide epitope
Mutation: V2004I
Gene Name(s): Hm13 H13 Psl3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.205
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 92.00 α = 90.00
b = 109.71 β = 120.52
c = 57.65 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-08-24
  • Released Date: 2002-03-20
  • Deposition author(s): Ostrov, D.A., Roden, M.M., Shi, W., Palmieri, E., Christianson, G.J., Mendoza, L., Villaflor, G., Tilley, D., Shastri, N., Grey, H., Almo, S.C., Roopenian, D.C., Nathenson, S.G.

Revision History

  • 2016-05-25
    Type: Source and taxonomy | Details: Peptide was synthetically made
  • 2016-05-25
    Type: Citation | Details: Citation update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4