1JSZ

Crystal Structure Analysis of N7,9-dimethylguanine-VP39 complex

Structural Biology Knowledgebase: 1JSZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.93 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.210

Literature

Macromolecules
Sequence Display for 1JSZ

Classification: TRANSFERASE

Total Structure Weight: 36490.41

Macromolecule Entities
Molecule Chains Length Organism Details
VP39 A 307 Vaccinia virus EC#: 2.1.1.57 IUBMB
Fragment: residues 1-307
Gene Name(s): PAPS VACWR095 J3R
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SAH
Query on SAH

A S-ADENOSYL-L-HOMOCYSTEINE
C14 H20 N6 O5 S
ZJUKTBDSGOFHSH-WFMPWKQPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NDM
Query on NDM

A 7,9-DIMETHYLGUANINE
C7 H14 N5 O
UCYXILDOFXGENE-NKWVEPMBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.93 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.210
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 84.30 α = 90.00
b = 67.70 β = 118.10
c = 79.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-08-19
  • Released Date: 2002-07-10
  • Deposition author(s): Hu, G., Oguro, A., Gershon, P.D., Quiocho, F.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4