1JS3

Crystal structure of dopa decarboxylase in complex with the inhibitor carbidopa


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.187
  • R-Value Work: 0.144

Literature

Macromolecules
Sequence Display for 1JS3

Classification: LYASE

Total Structure Weight: 109336.36

Macromolecule Entities
Molecule Chains Length Organism Details
DOPA decarboxylase A, B 486 Sus scrofa EC#: 4.1.1.28 IUBMB
Gene Name(s): DDC Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PLP
Query on PLP

A, B PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate (Synonym)
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
142
Query on 142

A, B CARBIDOPA
3-(3, (Synonym)
C10 H14 N2 O4
TZFNLOMSOLWIDK-JTQLQIEISA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.187
  • R-Value Work: 0.144
  • Space Group: P 62

Unit Cell:

Length (Å) Angle (°)
a = 154.36 α = 90.00
b = 154.36 β = 90.00
c = 86.78 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-08-16
  • Released Date: 2001-10-26
  • Deposition author(s): Burkhard, P., Dominici, P., Borri-Voltattorni, C., Jansonius, J.N., Malashkevich, V.N.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update