1JR9

Crystal Structure of manganese superoxide dismutases from Bacillus halodenitrificans

Structural Biology Knowledgebase: 1JR9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.289
  • R-Value Work: 0.220

Literature

Macromolecules
Sequence Display for 1JR9

Classification: OXIDOREDUCTASE

Total Structure Weight: 22808.78

Macromolecule Entities
Molecule Chains Length Organism Details
manganese superoxide dismutase A 202 Virgibacillus halodenitrificans EC#: 1.15.1.1 IUBMB
Fragment: green protein
Gene Name(s): sodA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.289
  • R-Value Work: 0.220
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 93.12 α = 90.00
b = 93.12 β = 90.00
c = 63.53 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-08-13
  • Released Date: 2002-08-14
  • Deposition author(s): Liao, J., Liu, M.Y., Chang, T., Li, M., LeGall, J., Gui, L.L., Zhang, J.P., Jiang, T., Liang, D.C., Chang, W.R.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4