1JPN

GMPPNP Complex of SRP GTPase NG Domain

Structural Biology Knowledgebase: 1JPN SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.190

Literature

Macromolecules
Sequence Display for 1JPN

Classification: SIGNALING PROTEIN

Total Structure Weight: 66310.29

Macromolecule Entities
Molecule Chains Length Organism Details
SIGNAL RECOGNITION PARTICLE PROTEIN A, B 296 Thermus aquaticus Fragment: NG domain
Gene Name(s): ffh
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GNP
Query on GNP

A, B PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
C10 H17 N6 O13 P3
UQABYHGXWYXDTK-UUOKFMHZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACY
Query on ACY

A, B ACETIC ACID
C2 H4 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.190
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 108.82 α = 90.00
b = 54.53 β = 97.42
c = 99.08 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-08-02
  • Released Date: 2002-02-02
  • Deposition author(s): Padmanabhan, S., Freymann, D.M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4