1JPM

L-Ala-D/L-Glu Epimerase

Structural Biology Knowledgebase: 1JPM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.197

Literature

Macromolecules
Sequence Display for 1JPM

Classification: ISOMERASE

Total Structure Weight: 158268.92

Macromolecule Entities
Molecule Chains Length Organism Details
L-Ala-D/L-Glu Epimerase A, B, C, D 366 Bacillus subtilis EC#: 5.1.1.20 IUBMB
Fragment: L-Ala-D/L-Glu Epimerase
Gene Name(s): ykfB BSU12980
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C, D MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.197
  • Space Group: I 4

Unit Cell:

Length (Å) Angle (°)
a = 157.63 α = 90.00
b = 157.63 β = 90.00
c = 168.32 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-08-02
  • Released Date: 2001-12-21
  • Deposition author(s): Gulick, A.M., Schmidt, D.M.Z., Gerlt, J.A., Rayment, I.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update