1JOK

Averaged structure for Staphylococcal nuclease-H124L in ternary complex with Ca2+ and thymidine-3',5'-bisphosphate

Structural Biology Knowledgebase: 1JOK SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: --
  • Conformers Submitted: 1
  • Selection Criteria:

Literature

Macromolecules
Sequence Display for 1JOK

Classification: HYDROLASE

Total Structure Weight: 17220.69

Macromolecule Entities
Molecule Chains Length Organism Details
staphylococcal nuclease A 149 Staphylococcus aureus EC#: 3.1.31.1 IUBMB
Fragment: nuclease A
Mutation: H124L
Gene Name(s): nuc
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
THP
Query on THP

A THYMIDINE-3',5'-DIPHOSPHATE
C10 H16 N2 O11 P2
CSNCBOPUCJOHLS-XLPZGREQSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: --
  • Conformers Submitted: 1
  • Selection Criteria: --

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-07-30
  • Released Date: 2001-08-22
  • Deposition author(s): Wang, J., Truckses, D.M., Abildgaard, F., Dzakula, Z., Zolnai, Z., Markley, J.L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4