Macromolecules
Sequence Display for 1JOD

Classification: SIGNALING PROTEIN

Total Structure Weight: 39970.25

Macromolecule Entities
Molecule Chains Length Organism Details
Olfactory Marker Protein A, B 162 Mus musculus Mutation: M113M, M125M, M195M, M215M, M239M
Gene Name(s): Omp
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CAC
Query on CAC

A, B CACODYLATE ION
dimethylarsinate (Synonym)
C2 H6 As O2
OGGXGZAMXPVRFZ-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.326
  • R-Value Work: 0.256
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 89.13 α = 90.00
b = 89.13 β = 90.00
c = 158.98 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-07-27
  • Released Date: 2001-08-22
  • Deposition author(s): Smith, P., Hunt, J.F.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update