1JKD

HUMAN LYSOZYME MUTANT WITH TRP 109 REPLACED BY ALA

Structural Biology Knowledgebase: 1JKD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.174

Literature

Macromolecules
Sequence Display for 1JKD

Classification: LYSOZYME

Total Structure Weight: 14729.66

Macromolecule Entities
Molecule Chains Length Organism Details
LYSOZYME A 130 Homo sapiens EC#: 3.2.1.17 IUBMB
Mutation: W109A
Gene Name(s): LYZ Gene View LZM
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NO3
Query on NO3

A NITRATE ION
N O3
NHNBFGGVMKEFGY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.174
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 57.21 α = 90.00
b = 61.19 β = 90.00
c = 32.99 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-11-13
  • Released Date: 1997-05-15
  • Deposition author(s): Muraki, M., Harata, K., Goda, S., Nagahora, H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4