1JIO

P450eryF/6DEB

Structural Biology Knowledgebase: 1JIO SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.195

Literature

Macromolecules
Sequence Display for 1JIO

Classification: HYDROLASE

Total Structure Weight: 46025.41

Macromolecule Entities
Molecule Chains Length Organism Details
CYTOCHROME P450 107A1 A 403 Saccharopolyspora erythraea EC#: 1.14.13.188 IUBMB
Gene Name(s): eryF CYP107A1 SACE_0730
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DEB
Query on DEB

A 6-DEOXYERYTHRONOLIDE B
C21 H38 O6
HQZOLNNEQAKEHT-IBBGRPSASA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.195
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 54.07 α = 90.00
b = 78.68 β = 90.00
c = 98.82 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-07-02
  • Released Date: 2001-10-17
  • Deposition author(s): Cupp-Vickery, J.R., Garcia, C., Hofacre, A., McGee-Estrada, K.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4