1JI5

Dlp-1 from bacillus anthracis

Structural Biology Knowledgebase: 1JI5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.291
  • R-Value Work: 0.226

Literature

Macromolecules
Sequence Display for 1JI5

Classification: metal transport

Total Structure Weight: 66045.21

Macromolecule Entities
Molecule Chains Length Organism Details
Dlp-1 A, B, C, D 142 Bacillus anthracis Gene Name(s): dps2 dlp1 BA_5290 GBAA_5290 BAS4914
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MPD
Query on MPD

B (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE
Query on FE

A, B, C, D FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.291
  • R-Value Work: 0.226
  • Space Group: H 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 89.22 α = 90.00
b = 89.22 β = 90.00
c = 210.16 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-06-29
  • Released Date: 2002-06-19
  • Deposition author(s): Papinutto, E., Dundon, W.G., Pitulis, N., Battistutta, R., Montecucco, C., Zanotti, G.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values