1JDE

K22A mutant of pyruvate, phosphate dikinase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Work: 0.193

Literature

Macromolecules
Sequence Display for 1JDE

Classification: TRANSFERASE

Total Structure Weight: 96774.17

Macromolecule Entities
Molecule Chains Length Organism Details
PYRUVATE, PHOSPHATE DIKINASE A 873 [clostridium] symbiosum EC#: 2.7.9.1 IUBMB
Mutation: K22A
Gene Name(s): ppdK
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Observed:
  • Space Group: P 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 89.90 α = 90.00
b = 58.60 β = 95.10
c = 102.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-06-13
  • Released Date: 2001-11-28
  • Deposition author(s): Ye, D., Wei, M., McGuire, M., Huang, K., Kapadia, G., Herzberg, O., Martin, B.M., Dunaway-Mariano, D.

Revision History

  • Version 1_0: 2001-11-28

    Type: Initial release

  • Version 1_1: 2008-04-27

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Derived calculations, Version format compliance

  • Version 1_3: 2017-10-04

    Type: Refinement description