1JC8

Solution structure of lactam analogue (DDap) of gp41 600-612 loop of HIV

Structural Biology Knowledgebase: 1JC8 SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 50
  • Conformers Submitted: 20
  • Selection Criteria: Target Function

Literature

Macromolecules
Sequence Display for 1JC8

Classification: Viral protein

Total Structure Weight: 1374.58

Macromolecule Entities
Molecule Chains Length Organism Details
DDap: (ACE)IWGDSGKLI(DNP)TTA ANALOGUE OF HIV GP41 A 14 Human immunodeficiency virus 1 Mutation: C5D, C11X
Details: ATOM OD2 OF ASP 5 IS MISSING DUE TO THE SIDE-CHAIN LINK BETWEEN ASP 5 AND DNP 11
Gene Name(s): env
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
ACE
Query on ACE
A NON-POLYMER C2 H4 O --
SET
Query on SET
A L-PEPTIDE LINKING C3 H8 N2 O2 SER

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 50
  • Conformers Submitted: 20
  • Selection Criteria: target function

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-06-08
  • Released Date: 2003-07-01
  • Deposition author(s): Phan Chan Du, A., Limal, D., Semetey, V., Dali, H., Jolivet, M., Desgranges, C., Cung, M.T., Briand, J.P., Petit, M.C., Muller, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4