1JC4

Crystal Structure of Se-Met Methylmalonyl-CoA Epimerase

Structural Biology Knowledgebase: 1JC4 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.228

Literature

Macromolecules
Sequence Display for 1JC4

Classification: ISOMERASE

Total Structure Weight: 68845.68

Macromolecule Entities
Molecule Chains Length Organism Details
Methylmalonyl-CoA epimerase A, B, C, D 148 Propionibacterium freudenreichii EC#: 5.1.99.1 IUBMB
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B, C, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.228
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 43.60 α = 90.00
b = 78.62 β = 91.95
c = 89.43 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-06-07
  • Released Date: 2001-07-11
  • Deposition author(s): Mc Carthy, A.A., Baker, H.M., Shewry, S.C., Patchett, M.L., Baker, E.N.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4