1JAO

COMPLEX OF 3-MERCAPTO-2-BENZYLPROPANOYL-ALA-GLY-NH2 WITH THE CATALYTIC DOMAIN OF MATRIX METALLO PROTEINASE-8 (MET80 FORM)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Observed: 0.183

Literature

Macromolecules
Sequence Display for 1JAO

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 18646.13

Macromolecule Entities
Molecule Chains Length Organism Details
MATRIX METALLO PROTEINASE-8 (MET80 FORM) A 163 Homo sapiens EC#: 3.4.24.34 IUBMB
Fragment: CATALYTIC DOMAIN, RESIDUES 80 - 242
Details: MMP-8 IS IDENTICAL TO THE HUMAN NEUTROPHIL COLLAGENASE
Gene Name(s): MMP8 Gene View CLG1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0D3
Query on 0D3

N-[(2S)-2-benzyl-3-sulfanylpropanoyl]-L-alanylglycinamide
C15 H21 N3 O3 S
AUJQAKJLNYFOHT-CMPLNLGQSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
0D3 N/A in BindingDB
Ki: 1200 nM  BindingMOAD
N/A in PDBbind
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000232
Query on PRD_000232
A N-[(2S)-2-benzyl-3-sulfanylpropanoyl]-L-alanylglycinamide Peptide-like /
Inhibitor
Ligand Explorer

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Observed: 0.183
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 33.24 α = 90.00
b = 69.20 β = 90.00
c = 72.33 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-03-11
  • Released Date: 1996-07-11
  • Deposition author(s): Grams, F., Reinemer, P., Powers, J.C., Kleine, T., Piper, M., Tschesche, H., Huber, R., Bode, W.

Revision History

  • Version 1_0: 1996-07-11

    Type: Initial release

  • Version 1_1: 2008-03-24

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Atomic model, Database references, Derived calculations, Non-polymer description, Structure summary, Version format compliance

  • Version 1_3: 2012-12-12

    Type: Other