1J9H

Crystal Structure of an RNA Duplex with Uridine Bulges

Structural Biology Knowledgebase: 1J9H SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.212

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1J9H

Classification: RNA

Total Structure Weight: 11802.96

Macromolecule Entities
Molecule Chains Length Organism Details
5'-R(*GP*UP*GP*UP*CP*GP*(CBR)P*AP*C)-3' A, B, C, D 9 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A, B, C, D CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CBR
Query on CBR
A, B, C, D DNA LINKING C9 H13 Br N3 O7 P DC

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.212
  • Space Group: P 41 2 2

Unit Cell:

Length (Å) Angle (°)
a = 47.18 α = 90.00
b = 47.18 β = 90.00
c = 80.04 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2001-05-25
  • Released Date: 2001-10-26
  • Deposition author(s): Xiong, Y., Deng, J., Sudarsanakumar, C., Sundaralingam, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4