1J4U

Structure of Artocarpin Complexed with Me-alpha-Mannose

Structural Biology Knowledgebase: 1J4U SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.222

Literature

Macromolecules
Sequence Display for 1J4U

Classification: PLANT PROTEIN

Total Structure Weight: 65245.23

Macromolecule Entities
Molecule Chains Length Organism Details
Artocarpin A, B, C, D 149 Artocarpus integer Mutation: A1X, P9S, D20E, E49D, R70K, A84G, V145I, A148S
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MMA
Query on MMA

A, B, C, D O1-METHYL-MANNOSE
C7 H14 O6
HOVAGTYPODGVJG-VEIUFWFVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
AYA
Query on AYA
A, B, C, D L-PEPTIDE LINKING C5 H9 N O3 ALA

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.222
  • Space Group: P 61
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 129.20 α = 90.00
b = 129.20 β = 90.00
c = 78.61 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-10-30
  • Released Date: 2002-03-27
  • Deposition author(s): Pratap, J.V., Jeyaprakash, A.A., Rani, P.G., Sekar, K., Surolia, A., Vijayan, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4