1J4R

FK506 BINDING PROTEIN COMPLEXED WITH FKB-001

Structural Biology Knowledgebase: 1J4R SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.205

Literature

Macromolecules
Sequence Display for 1J4R

Classification: ISOMERASE

Total Structure Weight: 37668.21

Macromolecule Entities
Molecule Chains Length Organism Details
FK506-BINDING PROTEIN A, B, D 107 Homo sapiens EC#: 5.2.1.8 IUBMB
Gene Name(s): FKBP1A Gene View FKBP1 FKBP12
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
001
Query on 001

A, B, D 1-[2,2-DIFLUORO-2-(3,4,5-TRIMETHOXY-PHENYL)- ACETYL]-PIPERIDINE-2-CARBOXYLIC ACID 4-PHENYL- 1-(3-PYRIDIN-3-YL-PROPYL)-BUTYL ESTER
FKB-001 (Synonym)
C35 H42 F2 N2 O6
NBYCDVVSYOMFMS-VMPREFPWSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

B, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
001 N/A in BindingDB
Ki: 19 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.205
  • Space Group: P 32
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 56.00 α = 90.00
b = 56.00 β = 90.00
c = 78.40 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-10-29
  • Released Date: 2001-12-19
  • Deposition author(s): Sheriff, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update