1J3R

Crystal structure of Thermococcus litoralis phosphogrucose isomerase complexed with gluconate-6-phosphate

Structural Biology Knowledgebase: 1J3R SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.18 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.218

Literature

Macromolecules
Sequence Display for 1J3R

Classification: ISOMERASE

Total Structure Weight: 44108.18

Macromolecule Entities
Molecule Chains Length Organism Details
Phosphoglucose Isomerase A, B 190 Thermococcus litoralis EC#: 5.3.1.9 IUBMB
Gene Name(s): pgiA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
6PG
Query on 6PG

A, B 6-PHOSPHOGLUCONIC ACID
C6 H13 O10 P
BIRSGZKFKXLSJQ-SQOUGZDYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE
Query on FE

A FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.18 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.218
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 40.67 α = 90.00
b = 80.23 β = 90.00
c = 130.04 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-02-11
  • Released Date: 2004-02-24
  • Deposition author(s): Jeong, J.-J., Fushinobu, S., Ito, S., Hidaka, M., Shoun, H., Wakagi, T.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4