1J2Z

Crystal structure of UDP-N-acetylglucosamine acyltransferase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.222

Literature

Macromolecules
Sequence Display for 1J2Z

Classification: TRANSFERASE

Total Structure Weight: 30547.13

Macromolecule Entities
Molecule Chains Length Organism Details
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase A 270 Helicobacter pylori EC#: 2.3.1.129 IUBMB
Gene Name(s): lpxA HP_1375
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SOG
Query on SOG

A 2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO- PYRAN-3,4,5-TRIOL
1-S-OCTYL-BETA-D-THIOGLUCOSIDE (Synonym)
C14 H28 O5 S
CGVLVOOFCGWBCS-RGDJUOJXSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
TLA
Query on TLA

A L(+)-TARTARIC ACID
C4 H6 O6
FEWJPZIEWOKRBE-JCYAYHJZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.222
  • Space Group: P 63 2 2

Unit Cell:

Length (Å) Angle (°)
a = 90.69 α = 90.00
b = 90.69 β = 90.00
c = 148.20 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-01-15
  • Released Date: 2004-01-27
  • Deposition author(s): Lee, B.I., Suh, S.W.

Revision History

  • 2008-04-27
    Type: Version format compliance
  • 2011-07-13
    Type: Derived calculations, Version format compliance