1J1V

Crystal structure of DnaA domainIV complexed with DnaAbox DNA

Structural Biology Knowledgebase: 1J1V SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.229

Literature

Macromolecules
Sequence Display for 1J1V

Classification: replication / DNA

Total Structure Weight: 18776.45


Macromolecule Entities
Molecule Chains Length Organism Details
Chromosomal replication initiator protein dnaA A 94 Escherichia coli Fragment: DNA binding domain, DnaA domainIV
Mutation: M409M, M411M
Gene Name(s): dnaA b3702 JW3679
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*TP*GP*TP*TP*AP*TP*CP*CP*AP*CP*AP*GP*G)-3' B 13 synthetic
5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3' C 13 synthetic

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.229
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 50.38 α = 90.00
b = 50.38 β = 90.00
c = 158.83 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-12-18
  • Released Date: 2003-04-22
  • Deposition author(s): Fujikawa, N., Kurumizaka, H., Nureki, O., Terada, T., Shirouzu, M., Katayama, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4