1J1S

Pokeweed Antiviral Protein from Seeds (PAP-S1) Complexed with Formycin

Structural Biology Knowledgebase: 1J1S SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.164

Literature

Macromolecules
Sequence Display for 1J1S

Classification: HYDROLASE

Total Structure Weight: 29803.02

Macromolecule Entities
Molecule Chains Length Organism Details
Antiviral Protein S A 261 Phytolacca americana EC#: 3.2.2.22 IUBMB
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FMP
Query on FMP

A FORMYCIN-5'-MONOPHOSPHATE
C10 H14 N5 O7 P
PBAHXXBYQACZMA-KSYZLYKTSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.164
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 79.10 α = 90.00
b = 85.30 β = 90.00
c = 92.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-12-14
  • Released Date: 2004-02-03
  • Deposition author(s): Watanabe, K., Sato, E., Honjo, E., Motoshima, H., Kurokawa, H., Mikami, B., Monzingo, A.F., Robertus, J.D., Fujii, H., Hidaka, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update