1J1M

Ricin A-Chain (Recombinant) at 100K

Structural Biology Knowledgebase: 1J1M SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.192

Literature

Macromolecules
Sequence Display for 1J1M

Classification: HYDROLASE

Total Structure Weight: 30945.90

Macromolecule Entities
Molecule Chains Length Organism Details
Ricin A 268 Ricinus communis EC#: 3.2.2.22 IUBMB
Mutation: N136D
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TRE
Query on TRE

A TREHALOSE
ALPHA-D-GLUCOPYRANOSYL-ALPHA-D-GLUCOPYRANOSIDE (Synonym)
C12 H22 O11
HDTRYLNUVZCQOY-LIZSDCNHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.192
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 67.60 α = 90.00
b = 67.60 β = 90.00
c = 141.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-12-10
  • Released Date: 2004-02-03
  • Deposition author(s): Watanabe, K., Motoshima, H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4